STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2424PFAM: monooxygenase FAD-binding; KEGG: sen:SACE_6186 monooxygenase, FAD-binding. (393 aa)    
Predicted Functional Partners:
Tpau_2423
PFAM: beta-lactamase domain protein; KEGG: nfa:nfa14650 hypothetical protein.
  
    0.778
uvrA
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
     
 0.573
Tpau_2816
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mav:MAV_1802 2,3-dihydroxybiphenyl-1,2- dioxygenase.
 
   
 0.538
Tpau_3480
Mycocerosate synthase., 6-deoxyerythronolide-B synthase; KEGG: sen:SACE_4141 type I modular polyketide synthase; PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; KR domain protein; Acyl transferase; NAD-dependent epimerase/dehydratase; phosphopantetheine- binding.
 
 
 0.533
Tpau_2425
KEGG: rop:ROP_07020 hypothetical protein.
     
 0.526
Tpau_2820
PFAM: amidohydrolase 2; KEGG: bur:Bcep18194_B2954 amidohydrolase 2.
 
  
 0.519
Tpau_1503
O-pyrocatechuate decarboxylase; KEGG: bur:Bcep18194_B3061 amidohydrolase 2; PFAM: amidohydrolase 2.
 
  
 0.514
Tpau_0310
PFAM: monooxygenase FAD-binding; KEGG: sco:SCO3245 salicylate hydroxylase (secreted protein).
  
     0.507
Tpau_3476
KEGG: stp:Strop_2778 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; Thioesterase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding.
 
 
 0.498
Tpau_3477
PFAM: Acyl transferase; KR domain protein; Beta- ketoacyl synthase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; phosphopantetheine-binding; KEGG: sgr:SGR_6073 putative type-I PKS.
 
 
 0.476
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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