Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2451KEGG: sco:SCO0407 transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; PBS lyase HEAT domain protein repeat-containing protein. (339 aa)    
Predicted Functional Partners:
Tpau_2450
KEGG: sgr:SGR_5956 hypothetical protein.
 
     0.946
Tpau_1614
KEGG: sma:SAV_2781 MerR family transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR.
  
     0.586
Tpau_0636
KEGG: mjl:Mjls_2649 MerR family transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR.
  
     0.573
Tpau_2449
PFAM: protein of unknown function DUF1508; KEGG: tde:TDE0826 hypothetical protein.
  
    0.446
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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