Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2495PFAM: Lycopene beta and epsilon cyclase; KEGG: nfa:nfa34900 putative lycopene cyclase. (351 aa)    
Predicted Functional Partners:
Tpau_0484
KEGG: rha:RHA1_ro01107 phytoene dehydrogenase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase.
 
 
 0.974
Tpau_2493
KEGG: bcv:Bcav_0103 histidine kinase.
 
     0.811
Tpau_2494
KEGG: ami:Amir_4995 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.
       0.778
Tpau_0472
PFAM: Squalene/phytoene synthase; KEGG: krh:KRH_20840 phytoene synthase.
 
  
 0.696
Tpau_2917
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: nfa:nfa42790 putative electron transfer flavoprotein beta subunit.
  
 
 0.691
Tpau_2659
KEGG: rer:RER_35670 beta-carotene ketolase.
 
  
 0.671
Tpau_0119
TIGRFAM: RecB family nuclease, putative; KEGG: nfa:nfa1140 hypothetical protein.
  
     0.653
Tpau_4215
KEGG: rer:RER_59980 hypothetical protein.
 
     0.646
Tpau_2660
KEGG: nfa:nfa17510 putative lipoprotein.
  
     0.614
Tpau_2691
KEGG: nfa:nfa17250 hypothetical protein.
  
     0.595
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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