Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2508FeS assembly protein SufD; KEGG: rop:ROP_69850 putative iron-sulfur cluster assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein. (392 aa)    
Predicted Functional Partners:
Tpau_2507
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: rer:RER_30570 iron-sulfur cluster assembly protein SufC; SMART: AAA ATPase.
 
 
 0.998
Tpau_2505
KEGG: msm:MSMEG_3126 SUF system FeS assembly protein, NifU family protein; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein.
 
  
 0.983
Tpau_2506
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.974
Tpau_2504
PFAM: protein of unknown function DUF59; KEGG: fra:Francci3_1666 hypothetical protein.
 
   
 0.949
Tpau_2510
Putative transcriptional regulator; PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: rer:RER_30540 hypothetical protein.
  
  
 0.936
Tpau_2509
FeS assembly protein SufB; KEGG: nfa:nfa35600 hypothetical protein; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.
 
   
0.917
Tpau_0546
Cysteine desulfurase; KEGG: mab:MAB_0512 aminotransferase/cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase.
 
 
 0.878
Tpau_4098
KEGG: mjl:Mjls_5370 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V.
 
 
 0.822
Tpau_2511
KEGG: rha:RHA1_ro07194 hypothetical protein.
     
 0.674
Tpau_2513
KEGG: nfa:nfa35660 putative ABC transporter membrane protein; TIGRFAM: ABC drug efflux pump, inner membrane subunit, DrrB family; PFAM: ABC-2 type transporter.
       0.671
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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