Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2519PFAM: transglutaminase domain protein; KEGG: rer:RER_56580 hypothetical protein. (278 aa)    
Predicted Functional Partners:
Tpau_2520
KEGG: sco:SCO6238 hypothetical protein.
       0.741
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.494
Tpau_1965
PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: mbt:JTY_2584 hypothetical alanine and leucine rich protein.
  
  
 0.428
Tpau_0975
KEGG: cai:Caci_0885 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
     0.417
Tpau_1635
PFAM: oxidoreductase domain protein; KEGG: ach:Achl_1753 oxidoreductase domain protein.
 
     0.405
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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