STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2528KEGG: ami:Amir_6275 hypothetical protein. (309 aa)    
Predicted Functional Partners:
Tpau_2527
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mab:MAB_4629 hypothetical protein.
 
     0.797
Tpau_2529
KEGG: svi:Svir_32840 hypothetical protein.
       0.773
Tpau_2530
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
       0.773
Tpau_0144
KEGG: mab:MAB_2775c hypothetical protein.
  
     0.724
Tpau_3112
KEGG: mkm:Mkms_4179 hypothetical protein.
  
     0.716
Tpau_1572
KEGG: ami:Amir_0114 hypothetical protein.
  
     0.692
Tpau_1779
KEGG: rer:RER_27430 hypothetical protein.
  
     0.677
Tpau_3378
KEGG: nfa:nfa8520 hypothetical protein.
  
     0.674
Tpau_0332
Secretion protein snm4; KEGG: msm:MSMEG_0068 transmembrane protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.654
Tpau_0864
Secretion protein snm4; KEGG: nfa:nfa8270 hypothetical protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.653
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.