Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2535PFAM: Limonene-12-epoxide hydrolase; KEGG: mmi:MMAR_1973 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Tpau_3208
PFAM: Limonene-12-epoxide hydrolase; KEGG: mmi:MMAR_1973 hypothetical protein.
  
  
 
0.914
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
       0.690
Tpau_3462
PFAM: regulatory protein TetR; KEGG: ami:Amir_2879 regulatory protein TetR.
  
     0.605
Tpau_1267
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro00948 acyl-CoA synthetase.
  
     0.545
Tpau_2470
Protein of unknown function DUF222; KEGG: rha:RHA1_ro02511 hypothetical protein; PFAM: protein of unknown function DUF222; SMART: HNH nuclease.
  
   
 0.516
Tpau_2465
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro00436 hypothetical protein.
  
     0.515
Tpau_1197
KEGG: nfa:nfa26160 hypothetical protein.
  
     0.507
Tpau_3745
Protein of unknown function DUF222; KEGG: rha:RHA1_ro02511 hypothetical protein; PFAM: protein of unknown function DUF222; HNH endonuclease; SMART: HNH nuclease.
  
   
 0.497
Tpau_4127
PFAM: protein of unknown function DUF222; HNH endonuclease; KEGG: rha:RHA1_ro02511 hypothetical protein.
  
   
 0.496
Tpau_3062
PFAM: protein of unknown function UPF0089; KEGG: mab:MAB_1278 hypothetical protein.
  
     0.495
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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