Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2556Amino acid/peptide transporter; KEGG: rha:RHA1_ro05158 di/tripeptide permease; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1. (484 aa)    
Predicted Functional Partners:
Tpau_2555
KEGG: rer:pREC1_0076 hypothetical protein.
       0.648
Tpau_2557
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: dra:DR_0965 GMC oxidoreductase.
       0.512
Tpau_2558
PFAM: Aldehyde Dehydrogenase; KEGG: nca:Noca_1053 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.512
Tpau_2764
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
 
   
 0.456
Tpau_2554
KEGG: rer:RER_40450 hypothetical protein; PFAM: Protein of unknown function DUF2075; SMART: AAA ATPase.
       0.441
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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