Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2593PFAM: YCII-related; KEGG: nca:Noca_0396 DGPFAETKE family protein. (121 aa)    
Predicted Functional Partners:
Tpau_3085
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mjl:Mjls_3109 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein.
 
    0.786
Tpau_0814
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: nca:Noca_4614 sigma-70 region 2 domain- containing protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
 
    0.783
Tpau_3786
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: nca:Noca_2117 sigma-70 region 2 domain- containing protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
 
    0.781
Tpau_3086
PFAM: YCII-related; KEGG: krh:KRH_21960 hypothetical protein.
  
     0.772
Tpau_2592
KEGG: mmi:MMAR_2781 hypothetical protein; Belongs to the UPF0312 family.
       0.655
Tpau_2594
Transcriptional regulator, LuxR family; KEGG: nfa:nfa18100 putative transcriptional regulator; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR.
 
     0.648
Tpau_2591
PFAM: peptidase M24; creatinase; KEGG: rer:RER_29960 aminopeptidase.
       0.518
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.499
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.499
Tpau_2595
KEGG: svi:Svir_37010 conserved hypothetical protein TIGR00026.
       0.478
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.