Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_2595KEGG: svi:Svir_37010 conserved hypothetical protein TIGR00026. (151 aa)    
Predicted Functional Partners:
Tpau_2596
PFAM: regulatory protein TetR; KEGG: svi:Svir_37020 transcriptional regulator, TetR family.
 
     0.756
Tpau_2594
Transcriptional regulator, LuxR family; KEGG: nfa:nfa18100 putative transcriptional regulator; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR.
       0.645
Tpau_2593
PFAM: YCII-related; KEGG: nca:Noca_0396 DGPFAETKE family protein.
       0.478
Tpau_2597
PFAM: secretory lipase; KEGG: rop:ROP_51020 hypothetical protein.
       0.467
Tpau_1533
PFAM: Protein of unknown function DUF2236; KEGG: rer:RER_20960 hypothetical protein.
  
     0.427
Tpau_2592
KEGG: mmi:MMAR_2781 hypothetical protein; Belongs to the UPF0312 family.
       0.422
Tpau_0337
PFAM: nitroreductase; KEGG: fal:FRAAL6601 putative oxidoreductase.
  
     0.421
Tpau_2975
KEGG: nfa:nfa43210 hypothetical protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
     0.408
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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