Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2596PFAM: regulatory protein TetR; KEGG: svi:Svir_37020 transcriptional regulator, TetR family. (221 aa)    
Predicted Functional Partners:
Tpau_2595
KEGG: svi:Svir_37010 conserved hypothetical protein TIGR00026.
 
     0.756
Tpau_2597
PFAM: secretory lipase; KEGG: rop:ROP_51020 hypothetical protein.
       0.658
Tpau_2594
Transcriptional regulator, LuxR family; KEGG: nfa:nfa18100 putative transcriptional regulator; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR.
     
 0.478
Tpau_2822
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; KEGG: vpa:VPA1564 hypothetical protein.
 
     0.453
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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