Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2611KEGG: rha:RHA1_ro05767 hypothetical protein. (402 aa)    
Predicted Functional Partners:
Tpau_2608
Hypothetical protein.
       0.773
Tpau_2609
PFAM: lipopolysaccharide biosynthesis protein; KEGG: sco:SCO2712 hypothetical protein.
       0.773
Tpau_2610
PFAM: glycosyl transferase group 1; KEGG: msm:MSMEG_5951 glycosyl transferase, group 1, putative.
       0.773
Tpau_2612
PFAM: glycosyl transferase group 1; KEGG: msm:MSMEG_5964 glycosyl transferase, group 1, putative.
       0.773
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
       0.773
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.773
Tpau_2606
PFAM: Integrase catalytic region; KEGG: mva:Mvan_0583 integrase catalytic subunit.
       0.768
Tpau_2607
PFAM: transposase IS3/IS911 family protein; KEGG: nca:Noca_2153 transposase IS3/IS911 family protein.
       0.768
Tpau_2615
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: rha:RHA1_ro05438 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase.
       0.618
Tpau_2601
PFAM: glycosyl transferase family 2; KEGG: bbe:BBR47_17410 hypothetical protein.
       0.507
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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