Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2678PFAM: Polyketide cyclase/dehydrase; cyclase/dehydrase; KEGG: rop:ROP_08470 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Tpau_2677
KEGG: mjl:Mjls_3290 arsenite-transporting ATPase.
 
    0.863
Tpau_2679
KEGG: rop:ROP_08480 hypothetical protein.
 
     0.845
Tpau_2675
PFAM: ROK family protein; KEGG: nfa:nfa17130 putative sugar kinase.
       0.818
Tpau_2676
KEGG: rsq:Rsph17025_4215 hypothetical protein.
       0.778
Tpau_3042
PFAM: ABC-1 domain protein; KEGG: mab:MAB_3504 ABC transporter ATP-binding protein.
  
 
 
 0.766
Tpau_3659
KEGG: rop:ROP_18240 putative Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.764
Tpau_0628
PFAM: Protein of unknown function DUF2596; KEGG: rha:RHA1_ro02072 hypothetical protein.
  
     0.722
Tpau_0664
KEGG: rer:RER_16370 hypothetical protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
 
     0.718
Tpau_3936
PFAM: Anion-transporting ATPase; KEGG: rer:RER_04660 anion-transporting ATPase.
 
    0.684
Tpau_2673
Conserved hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
 
     0.568
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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