Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2811PFAM: cyclase/dehydrase; KEGG: rop:ROP_67300 hypothetical protein. (150 aa)    
Predicted Functional Partners:
Tpau_2809
PFAM: VWA containing CoxE family protein; KEGG: nfa:nfa13730 hypothetical protein.
 
     0.825
Tpau_2810
KEGG: mkm:Mkms_3610 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
       0.773
Tpau_1488
PFAM: acyl-ACP thioesterase; KEGG: mtb:TBMG_01985 hypothetical protein.
  
     0.667
Tpau_2804
degV family protein; KEGG: rop:ROP_10150 hypothetical protein; TIGRFAM: degV family protein; PFAM: DegV family protein.
       0.664
Tpau_2805
KEGG: rha:RHA1_ro01294 hypothetical protein.
       0.664
Tpau_2806
PFAM: Phosphoglycerate mutase; KEGG: mmi:MMAR_3747 phosphoglycerate mutase, Gpm_1; Belongs to the phosphoglycerate mutase family.
       0.664
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.664
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.664
Tpau_2812
PFAM: cyclase/dehydrase; KEGG: mbt:JTY_0876 hypothetical protein.
 
    
0.609
Tpau_0352
PFAM: conserved hypothetical protein; KEGG: mab:MAB_4524 hypothetical protein.
  
     0.539
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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