Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2834PFAM: Dak phosphatase; KEGG: rha:RHA1_ro06515 kinase related to hydroxyacetone kinase. (545 aa)    
Predicted Functional Partners:
Tpau_2804
degV family protein; KEGG: rop:ROP_10150 hypothetical protein; TIGRFAM: degV family protein; PFAM: DegV family protein.
 
 
 0.945
Tpau_2833
KEGG: rer:RER_24240 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase; helicase domain protein.
  
    0.914
rpmB
KEGG: nfa:nfa41960 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.638
disA
Protein of unknown function DUF147; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP likely acts as a signaling molecule that may couple DNA integrity with a cellular process.
  
     0.439
Tpau_0290
PFAM: protein of unknown function DUF322; KEGG: mab:MAB_1247c hypothetical protein.
  
  
 0.438
Tpau_4065
PFAM: protein of unknown function DUF322; KEGG: mab:MAB_1247c hypothetical protein.
  
  
 0.438
Tpau_1565
KEGG: mva:Mvan_2169 hypothetical protein.
 
     0.415
Tpau_2678
PFAM: Polyketide cyclase/dehydrase; cyclase/dehydrase; KEGG: rop:ROP_08470 hypothetical protein.
  
     0.413
Tpau_3659
KEGG: rop:ROP_18240 putative Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.413
Tpau_0158
KEGG: mjl:Mjls_5404 Cof-like hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase.
  
    0.410
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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