Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2840KEGG: rer:RER_24170 hypothetical protein. (192 aa)    
Predicted Functional Partners:
Tpau_3115
KEGG: mav:MAV_1229 hypothetical protein.
  
     0.774
Tpau_0516
KEGG: nfa:nfa53740 hypothetical protein.
  
     0.771
Tpau_3112
KEGG: mkm:Mkms_4179 hypothetical protein.
  
     0.771
Tpau_1115
KEGG: rha:RHA1_ro06355 hypothetical protein.
  
     0.770
Tpau_1881
KEGG: rha:RHA1_ro06826 secreted alanine rich protein.
  
     0.770
Tpau_3265
KEGG: msm:MSMEG_5468 hypothetical protein.
  
     0.770
Tpau_0132
KEGG: nfa:nfa1240 hypothetical protein.
  
     0.768
Tpau_0118
KEGG: mav:MAV_0179 hypothetical protein.
  
     0.767
Tpau_0876
KEGG: mbt:JTY_3504 hypothetical protein.
  
     0.766
Tpau_0730
KEGG: rer:RER_17050 hypothetical protein.
  
     0.765
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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