Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2885KEGG: rha:RHA1_ro05313 hypothetical protein. (52 aa)    
Predicted Functional Partners:
Tpau_2882
PFAM: Aldehyde Dehydrogenase; KEGG: rha:RHA1_ro05322 dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.786
Tpau_2883
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro05321 alcohol dehydrogenase.
       0.773
Tpau_2884
PFAM: AMP-dependent synthetase and ligase; Enoyl- CoA hydratase/isomerase; KEGG: rha:RHA1_ro05319 CoA ligase.
       0.773
Tpau_2886
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: mkm:Mkms_5538 transposase IS116/IS110/IS902 family protein.
     
 0.480
Tpau_2888
KEGG: rha:RHA1_ro05312 glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region.
  
  
 0.439
Tpau_1418
KEGG: rop:ROP_33220 putative Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein.
  
  
 0.402
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.