Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2894PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro05317 TetR family transcriptional regulator. (218 aa)    
Predicted Functional Partners:
Tpau_2260
PFAM: regulatory protein TetR; KEGG: mab:MAB_0341 TetR family transcriptional regulator.
  
     0.680
Tpau_2892
PFAM: bifunctional deaminase-reductase domain protein; KEGG: mkm:Mkms_0225 deaminase-reductase domain- containing protein.
       0.620
Tpau_2893
SMART: Helix-turn-helix, AraC domain; KEGG: mkm:Mkms_0224 AraC family transcriptional regulator.
       0.620
Tpau_2837
PFAM: amine oxidase; KEGG: rha:RHA1_ro05327 oxidase.
  
     0.592
Tpau_2895
PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro05325 oxidoreductase.
 
     0.579
Tpau_2887
PFAM: peptidase C26; KEGG: rha:RHA1_ro05313 hypothetical protein.
 
     0.535
Tpau_2896
KEGG: rha:RHA1_ro05326 hypothetical protein.
       0.465
Tpau_2888
KEGG: rha:RHA1_ro05312 glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region.
 
     0.459
Tpau_2991
PFAM: polysaccharide deacetylase; KEGG: nfa:nfa55250 putative polysaccharide deacetylase.
  
   
 0.434
Tpau_2890
PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_C6846 alpha/beta hydrolase.
       0.409
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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