Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mnmAtRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (365 aa)    
Predicted Functional Partners:
Tpau_2910
KEGG: rop:ROP_65190 cysteine desulfurase; PFAM: aminotransferase class V.
 
  
 0.930
Tpau_2908
PFAM: Methionine synthase vitamin-B12 independent; KEGG: rer:RER_23790 hypothetical protein.
     
 0.853
Tpau_2907
KEGG: mab:MAB_0355 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter.
       0.737
Tpau_2911
KEGG: mva:Mvan_2104 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
       0.721
Tpau_2912
KEGG: msm:MSMEG_2355 hypothetical protein.
       0.721
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: rer:RER_32900 phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.700
Tpau_0860
PFAM: carboxyl transferase; KEGG: rer:RER_45670 acetyl-CoA carboxylase beta chain.
  
  
 0.679
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
 
  
 0.570
Tpau_2913
PFAM: NUDIX hydrolase; KEGG: nfa:nfa42900 hypothetical protein.
 
     0.552
Tpau_2906
KEGG: hso:HS_1234 large adhesin.
       0.548
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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