Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2927KEGG: rha:RHA1_ro06456 hypothetical protein. (444 aa)    
Predicted Functional Partners:
Tpau_3374
KEGG: nfa:nfa8180 hypothetical protein.
  
    0.779
Tpau_0513
KEGG: rop:ROP_56120 hypothetical membrane protein.
  
    0.778
Tpau_0334
KEGG: mgi:Mflv_5453 hypothetical protein.
  
     0.772
Tpau_1333
Hypothetical protein; KEGG: rha:RHA1_ro05481 protease.
 
  
 0.772
Tpau_2076
KEGG: rop:ROP_69960 hypothetical membrane protein.
  
     0.771
Tpau_0416
KEGG: rer:RER_11110 hypothetical protein.
  
     0.765
Tpau_3546
KEGG: rop:ROP_49410 hypothetical protein.
  
     0.764
Tpau_0084
KEGG: msm:MSMEG_2697 hypothetical protein.
  
     0.763
Tpau_0502
KEGG: rha:RHA1_ro05516 hypothetical protein.
  
     0.757
Tpau_1488
PFAM: acyl-ACP thioesterase; KEGG: mtb:TBMG_01985 hypothetical protein.
  
     0.755
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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