Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2935PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: rha:RHA1_ro06454 hypothetical protein. (320 aa)    
Predicted Functional Partners:
Tpau_2934
KEGG: nfa:nfa42870 hypothetical protein.
       0.836
Tpau_2926
KEGG: rer:RER_23680 hypothetical protein.
 
     0.800
Tpau_2679
KEGG: rop:ROP_08480 hypothetical protein.
  
     0.769
Tpau_2918
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rer:RER_23720 methyltransferase.
 
 
 
 0.727
Tpau_2919
PFAM: glycoside hydrolase family 57; KEGG: rer:RER_23710 hypothetical protein; Belongs to the glycosyl hydrolase 57 family.
 
     0.723
Tpau_2805
KEGG: rha:RHA1_ro01294 hypothetical protein.
  
     0.712
Tpau_2920
PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: nfa:nfa42820 putative glycosyltransferase.
  
   
 0.685
Tpau_1300
KEGG: mav:MAV_1560 hypothetical protein.
  
     0.619
Tpau_1048
PFAM: GtrA family protein; KEGG: rha:RHA1_ro06298 hypothetical protein.
 
     0.575
Tpau_2936
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rer:RER_23640 enoyl-CoA hydratase.
     
 0.575
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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