Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpau_2956KEGG: rer:RER_52640 hypothetical protein; PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein. (200 aa)    
Predicted Functional Partners:
Tpau_2957
KEGG: mab:MAB_4636 hypothetical protein.
       0.592
Tpau_1123
UBA/THIF-type NAD/FAD binding protein; KEGG: mab:MAB_3525c molybdenum cofactor biosynthesis protein MoeB1; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein.
  
 
 0.475
Tpau_2154
FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits; KEGG: nfa:nfa8640 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; ABC-2 type transporter; Forkhead-associated protein; SMART: AAA ATPase; Forkhead-associated protein.
  
 
 0.446
Tpau_0107
KEGG: rop:ROP_35350 glutamate synthase large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II.
       0.415
Tpau_1217
PFAM: metallophosphoesterase; KEGG: mjl:Mjls_3950 metallophosphoesterase.
   
 0.413
Tpau_3041
KEGG: nfa:nfa45300 hypothetical protein.
    
 0.403
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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