Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2973PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro06435 TetR family transcriptional regulator. (198 aa)    
Predicted Functional Partners:
Tpau_2972
PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: mab:MAB_3417c NADPH-dependent FMN reductase.
 
     0.764
Tpau_0195
KEGG: ach:Achl_0269 transcriptional regulator, ArgP, LysR family; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate- binding.
  
   0.693
Tpau_3067
KEGG: mjl:Mjls_1079 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
   
    0.661
Tpau_3197
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mab:MAB_0998 LysR family transcriptional regulator.
   
   0.637
Tpau_3248
Two component transcriptional regulator, winged helix family; KEGG: sma:SAV_2395 two-component system response regulator for high-affinity potassium transport system; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
   
    0.619
Tpau_2165
PFAM: regulatory protein TetR; KEGG: cai:Caci_0403 transcriptional regulator, TetR family.
  
   
0.609
Tpau_0136
KEGG: nfa:nfa1290 putative transcriptional regulator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator.
   
    0.607
Tpau_1622
KEGG: rha:RHA1_ro00074 response regulator, two- component system; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
   
    0.578
Tpau_0853
PFAM: regulatory protein TetR; KEGG: sco:SCO0241 transcriptional regulator.
  
    0.563
Tpau_3943
PFAM: regulatory protein TetR; KEGG: rop:ROP_27770 putative TetR family transcriptional regulator.
   
    0.551
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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