Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_2975KEGG: nfa:nfa43210 hypothetical protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin. (463 aa)    
Predicted Functional Partners:
Tpau_4234
Cell wall hydrolase/autolysin; KEGG: rha:RHA1_ro03652 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; Peptidoglycan- binding domain 1 protein; SMART: cell wall hydrolase/autolysin.
    
 0.928
Tpau_4010
KEGG: rer:RER_03890 hydrolase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
  
 
0.919
Tpau_2324
PFAM: protein of unknown function DUF1396; KEGG: mbt:JTY_1404 putative lipoprotein.
  
     0.606
Tpau_2974
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rop:ROP_57060 putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.604
Tpau_1248
PFAM: ATP synthase I; KEGG: mmi:MMAR_4094 hypothetical protein.
  
     0.598
Tpau_2066
KEGG: mjl:Mjls_0871 hypothetical protein.
 
 
 
 0.590
Tpau_0367
PFAM: protein of unknown function DUF1396; KEGG: mjl:Mjls_2429 hypothetical protein.
  
     0.583
Tpau_2927
KEGG: rha:RHA1_ro06456 hypothetical protein.
 
     0.565
Tpau_2976
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rha:RHA1_ro06423 CobW protein.
  
  
 0.556
Tpau_3133
PFAM: regulatory protein TetR; KEGG: mab:MAB_1576 TetR family transcriptional regulator.
  
     0.542
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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