STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_2976PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rha:RHA1_ro06423 CobW protein. (359 aa)    
Predicted Functional Partners:
Tpau_2977
Rhodanese domain protein; KEGG: rha:RHA1_ro00857 hypothetical protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; Belongs to the UPF0176 family.
       0.841
Tpau_3290
PFAM: cobalamin synthesis CobW domain protein; KEGG: rha:RHA1_ro05618 hypothetical protein.
  
   
 0.758
Tpau_2981
PFAM: sulfatase; KEGG: rer:RER_16070 arylsulfatase.
   
   0.591
Tpau_2974
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rop:ROP_57060 putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.568
Tpau_2975
KEGG: nfa:nfa43210 hypothetical protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
  
  
 0.567
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.557
Tpau_2978
KEGG: nfa:nfa18260 hypothetical protein.
     
 0.556
Tpau_2979
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nfa:nfa18270 putative transporter.
       0.555
ssuB
ABC transporter related protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
       0.555
cobT
Nicotinate-nucleotide/dimethylbenzimidazolephosp horibosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
 
   
 0.508
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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