Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3006PFAM: Amidohydrolase 3; D-aminoacylase domain protein; KEGG: rop:ROP_21890 putative D-aminoacylase. (533 aa)    
Predicted Functional Partners:
Tpau_3007
KEGG: rha:RHA1_ro02460 D-amino acid deaminase.
 
   
 0.963
Tpau_3004
KEGG: rop:ROP_21910 gluconate permease; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter.
 
     0.835
Tpau_3005
KEGG: rop:ROP_21900 putative 4-hydroxy-2- oxoglutarate/2-dehydro-3-deoxy-phosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
 
     0.819
Tpau_3008
PFAM: PfkB domain protein; KEGG: rop:ROP_21870 putative carbohydrate kinase.
 
   
 0.658
Tpau_3009
KEGG: msm:MSMEG_3784 transcriptional regulator, IclR family protein; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
 
     0.616
Tpau_3010
PFAM: Endoribonuclease L-PSP; KEGG: rop:ROP_21850 YjgF/YER057c/UK114 family protein.
 
   
 0.608
Tpau_1746
PFAM: Amidohydrolase 3; amidohydrolase; KEGG: rer:RER_47290 hypothetical protein.
 
     0.586
Tpau_3003
KEGG: msm:MSMEG_2136 phosphoglucomutase; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II.
       0.527
Tpau_3002
KEGG: rer:RER_23310 hypothetical protein.
       0.454
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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