Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3008PFAM: PfkB domain protein; KEGG: rop:ROP_21870 putative carbohydrate kinase. (343 aa)    
Predicted Functional Partners:
Tpau_3005
KEGG: rop:ROP_21900 putative 4-hydroxy-2- oxoglutarate/2-dehydro-3-deoxy-phosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
 
 
 0.988
Tpau_4209
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: rop:ROP_20810 4-hydroxy-2-oxoglutarate/2- dehydro-3-deoxy-phosphogluconate aldolase; PFAM: KDPG and KHG aldolase.
 
 
 0.963
Tpau_3009
KEGG: msm:MSMEG_3784 transcriptional regulator, IclR family protein; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
 
   
 0.909
edd
6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
    
 0.905
Tpau_2564
TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: rha:RHA1_ro07167 ribulose-phosphate 3- epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.843
Tpau_3010
PFAM: Endoribonuclease L-PSP; KEGG: rop:ROP_21850 YjgF/YER057c/UK114 family protein.
 
  
 0.727
Tpau_3007
KEGG: rha:RHA1_ro02460 D-amino acid deaminase.
 
   
 0.718
Tpau_3004
KEGG: rop:ROP_21910 gluconate permease; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter.
 
  
 0.667
Tpau_3006
PFAM: Amidohydrolase 3; D-aminoacylase domain protein; KEGG: rop:ROP_21890 putative D-aminoacylase.
 
   
 0.658
Tpau_0186
KEGG: mkm:Mkms_0089 PTS system, fructose subfamily, IIC subunit; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2.
     
 0.483
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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