Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3012PFAM: lipase class 2; KEGG: rha:RHA1_ro04422 lipase. (314 aa)    
Predicted Functional Partners:
Tpau_3188
KEGG: nfa:nfa24020 putative lipase; PFAM: secretory lipase.
 
  
 0.517
Tpau_0362
KEGG: rop:ROP_11180 hypothetical protein.
  
     0.472
Tpau_0397
PFAM: protein of unknown function DUF214; KEGG: rop:ROP_61080 hypothetical membrane protein.
  
     0.466
Tpau_1210
PFAM: regulatory protein TetR; KEGG: rer:RER_41230 TetR family transcriptional regulator.
  
     0.465
Tpau_3038
KEGG: rop:ROP_64490 hypothetical protein.
  
     0.434
Tpau_1957
PFAM: regulatory protein TetR; KEGG: sen:SACE_3959 TetR family transcriptional regulator.
  
     0.415
Tpau_0886
KEGG: sgr:SGR_4034 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.412
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.