Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Tpau_3030KEGG: kra:Krad_3554 deoxyribodipyrimidine photo- lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein. (451 aa)    
Predicted Functional Partners:
Tpau_2326
PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: nfa:nfa49290 putative type III polyketide synthase.
    
 
 0.563
Tpau_3550
methylated-DNA/protein- cysteinemethyltransferase; KEGG: kra:Krad_2866 methylated-DNA--protein- cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding.
     
 0.541
Tpau_0126
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.538
Tpau_3029
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: nfa:nfa44930 putative acyl-CoA dehydrogenase.
       0.535
Tpau_3582
PFAM: domain of unknown function DUF1731; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: mva:Mvan_3512 hypothetical protein.
 
    0.501
Tpau_4155
PFAM: TspO/MBR family protein; KEGG: mab:MAB_2223 putative TspO/MBR-related protein precursor.
  
  
 0.499
Tpau_0472
PFAM: Squalene/phytoene synthase; KEGG: krh:KRH_20840 phytoene synthase.
 
   
 0.497
Tpau_3583
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02557 amine oxidase.
 
   
 0.477
Tpau_0484
KEGG: rha:RHA1_ro01107 phytoene dehydrogenase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase.
 
  
 0.475
Tpau_3584
PFAM: protein of unknown function DUF1365; KEGG: rop:ROP_22850 hypothetical protein.
 
  
 0.468
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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