Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3055PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcv:Bcav_3808 binding-protein-dependent transport systems inner membrane component. (532 aa)    
Predicted Functional Partners:
Tpau_3054
KEGG: ami:Amir_0748 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.991
Tpau_3056
KEGG: sen:SACE_0981 ABC transporter substrate- binding protein; TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1.
 
 
 0.991
Tpau_3053
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: nfa:nfa9780 putative oxidoreductase.
       0.765
Tpau_3057
PFAM: Protein of unknown function DUF2029; KEGG: rop:ROP_59900 mannosyltransferase PimE.
  
    0.716
Tpau_3058
PFAM: Abortive infection protein; KEGG: mab:MAB_0497 hypothetical protein.
  
    0.551
Tpau_2072
KEGG: rxy:Rxyl_1173 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.549
Tpau_2098
KEGG: rer:RER_25610 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.526
Tpau_1204
KEGG: rop:ROP_60540 hypothetical protein.
  
     0.494
Tpau_2304
KEGG: rop:ROP_34560 putative molybdate ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase.
 
 
 0.494
Tpau_1203
PFAM: metallophosphoesterase; KEGG: rer:RER_41390 hypothetical protein.
  
     0.453
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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