Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3058PFAM: Abortive infection protein; KEGG: mab:MAB_0497 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Tpau_0938
PFAM: conserved hypothetical protein; KEGG: mab:MAB_1509 hypothetical protein.
 
     0.741
Tpau_2148
PFAM: conserved hypothetical protein; KEGG: msm:MSMEG_5823 membrane-spanning protein.
 
     0.733
Tpau_3598
KEGG: mab:MAB_4180 IclR family transcriptional regulator; PFAM: regulatory protein IclR; SMART: regulatory protein IclR.
  
     0.718
Tpau_3057
PFAM: Protein of unknown function DUF2029; KEGG: rop:ROP_59900 mannosyltransferase PimE.
 
     0.642
Tpau_3803
KEGG: mab:MAB_1289c hypothetical protein.
 
     0.568
Tpau_3056
KEGG: sen:SACE_0981 ABC transporter substrate- binding protein; TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1.
       0.564
Tpau_3055
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcv:Bcav_3808 binding-protein-dependent transport systems inner membrane component.
  
    0.551
Tpau_2076
KEGG: rop:ROP_69960 hypothetical membrane protein.
  
     0.518
Tpau_3054
KEGG: ami:Amir_0748 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.517
Tpau_3053
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: nfa:nfa9780 putative oxidoreductase.
       0.509
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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