Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_3059KEGG: rop:ROP_16860 hypothetical protein. (278 aa)    
Predicted Functional Partners:
Tpau_0807
HNH endonuclease; KEGG: mav:MAV_4456 13e12 repeat-containing protein; PFAM: HNH endonuclease; SMART: HNH nuclease.
  
     0.688
Tpau_0570
KEGG: nfa:nfa4100 hypothetical protein.
  
     0.646
Tpau_1927
PFAM: RDD domain containing protein; KEGG: bcv:Bcav_3212 FHA domain containing protein.
  
     0.625
Tpau_3623
KEGG: mav:MAV_4706 hypothetical protein.
  
     0.623
Tpau_0881
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.577
Tpau_0943
KEGG: rop:ROP_62460 hypothetical protein.
  
     0.577
Tpau_2062
Hypothetical protein; KEGG: similar to CG16995 CG16995-PA.
  
     0.571
Tpau_0497
KEGG: mjl:Mjls_0128 hypothetical protein.
  
     0.552
Tpau_3922
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.550
Tpau_4215
KEGG: rer:RER_59980 hypothetical protein.
  
     0.527
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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