Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3067KEGG: mjl:Mjls_1079 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. (166 aa)    
Predicted Functional Partners:
Tpau_3071
PFAM: AMP-dependent synthetase and ligase; KEGG: ami:Amir_2275 AMP-dependent synthetase and ligase.
      0.859
Tpau_3068
KEGG: mkm:Mkms_1078 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; Belongs to the HIBADH-related family.
 
   
 0.855
Tpau_3069
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: mul:MUL_0836 acyl-CoA dehydrogenase, FadE9.
       0.755
Tpau_3070
KEGG: mav:MAV_2521 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase.
 
     0.743
Tpau_3197
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mab:MAB_0998 LysR family transcriptional regulator.
   
    0.682
Tpau_3248
Two component transcriptional regulator, winged helix family; KEGG: sma:SAV_2395 two-component system response regulator for high-affinity potassium transport system; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
   
    0.682
Tpau_0136
KEGG: nfa:nfa1290 putative transcriptional regulator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator.
   
  
 0.668
Tpau_2973
PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro06435 TetR family transcriptional regulator.
   
    0.661
Tpau_2095
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcv:Bcav_0524 transcriptional regulator, LysR family.
   
    0.629
Tpau_1622
KEGG: rha:RHA1_ro00074 response regulator, two- component system; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
   
    0.626
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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