STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3073KEGG: rer:RER_27080 ABC transporter permease protein. (533 aa)    
Predicted Functional Partners:
Tpau_3072
KEGG: rer:RER_27090 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.939
Tpau_3074
KEGG: sgr:SGR_2124 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; regulatory protein MarR; SMART: regulatory protein ArsR.
 
   
 0.728
Tpau_0881
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
 
   0.653
Tpau_3922
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
    0.652
Tpau_2062
Hypothetical protein; KEGG: similar to CG16995 CG16995-PA.
  
     0.635
Tpau_0077
PFAM: glycoside hydrolase family 5; KEGG: psa:PST_2494 endoglucanase precursor(endo-1,4- beta-glucanase)protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.608
Tpau_0913
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: nfa:nfa9000 hypothetical protein.
 
  
 0.606
Tpau_3071
PFAM: AMP-dependent synthetase and ligase; KEGG: ami:Amir_2275 AMP-dependent synthetase and ligase.
       0.592
Tpau_0078
Hypothetical protein; KEGG: xop:PXO_03299 endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.591
Tpau_0312
Hypothetical protein; KEGG: bch:Bcen2424_6766 PE-PGRS family protein.
 
    0.583
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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