Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3084KEGG: rop:ROP_67010 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Tpau_3085
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mjl:Mjls_3109 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein.
       0.571
Tpau_3086
PFAM: YCII-related; KEGG: krh:KRH_21960 hypothetical protein.
       0.571
Tpau_1465
KEGG: sma:SAV_1878 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.468
Tpau_1759
SMART: HNH nuclease; KEGG: mpa:MAP3151 hypothetical protein.
  
     0.412
Tpau_4083
PFAM: protein of unknown function DUF1470; KEGG: rop:ROP_21400 hypothetical protein.
  
     0.412
Tpau_3052
HNH endonuclease; KEGG: mab:MAB_1907 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease.
  
     0.400
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.