Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3085Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mjl:Mjls_3109 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein. (399 aa)    
Predicted Functional Partners:
Tpau_3086
PFAM: YCII-related; KEGG: krh:KRH_21960 hypothetical protein.
 
    0.949
Tpau_2593
PFAM: YCII-related; KEGG: nca:Noca_0396 DGPFAETKE family protein.
 
    0.786
Tpau_0813
PFAM: YCII-related; KEGG: nca:Noca_0396 DGPFAETKE family protein.
 
    0.785
Tpau_3084
KEGG: rop:ROP_67010 hypothetical protein.
       0.571
Tpau_3087
PFAM: ThiJ/PfpI domain protein; KEGG: rop:ROP_27050 ThiJ/PfpI family protein.
       0.480
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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