Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3102PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pjd:Pjdr2_5327 periplasmic binding protein/LacI transcriptional regulator. (326 aa)    
Predicted Functional Partners:
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.979
Tpau_3557
PFAM: inner-membrane translocator; KEGG: msm:MSMEG_6803 ribose transport system permease protein RbsC.
 
 0.935
Tpau_1359
PFAM: inner-membrane translocator; KEGG: rop:ROP_10620 putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.874
Tpau_3556
KEGG: msm:MSMEG_6802 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.837
Tpau_4211
ABC transporter related protein; KEGG: tfu:Tfu_1921 ABC-type sugar transport system ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.770
Tpau_4210
PFAM: inner-membrane translocator; KEGG: rsh:Rsph17029_3438 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.765
Tpau_1360
KEGG: rop:ROP_05220 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.744
Tpau_0406
PFAM: response regulator receiver; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rer:RER_40230 two-component system thioredoxin reductase; SMART: response regulator receiver.
   
 
 0.689
rbsK
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.607
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.552
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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