Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpau_3106PFAM: protein of unknown function DUF466; KEGG: msm:MSMEG_2258 hypothetical protein. (66 aa)    
Predicted Functional Partners:
Tpau_3105
PFAM: carbon starvation protein CstA; KEGG: msm:MSMEG_2259 carbon starvation protein A.
 
  
 0.983
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
       0.443
Tpau_1585
KEGG: rer:RER_42890 hypothetical protein.
  
     0.431
Tpau_2905
KEGG: mab:MAB_3346 hypothetical protein.
  
     0.420
Tpau_1955
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mva:Mvan_5321 cobalamin synthesis protein, P47K.
  
  
 0.411
Tpau_2976
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rha:RHA1_ro06423 CobW protein.
  
  
 0.411
Tpau_3290
PFAM: cobalamin synthesis CobW domain protein; KEGG: rha:RHA1_ro05618 hypothetical protein.
  
  
 0.411
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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