Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Tpau_3110PFAM: protein of unknown function UPF0118; KEGG: mgi:Mflv_4850 hypothetical protein. (414 aa)    
Predicted Functional Partners:
Tpau_3109
methylated-DNA/protein- cysteinemethyltransferase; KEGG: nfa:nfa47910 putative methylated-DNA:protein- cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding.
       0.802
Tpau_3111
PFAM: protein of unknown function DUF195; KEGG: rha:RHA1_ro05872 RmuC family DNA recombination protein.
       0.748
Tpau_3112
KEGG: mkm:Mkms_4179 hypothetical protein.
       0.498
Tpau_0365
KEGG: nfa:nfa54850 hypothetical protein.
 
   
 0.471
Tpau_0352
PFAM: conserved hypothetical protein; KEGG: mab:MAB_4524 hypothetical protein.
     
 0.437
Tpau_2566
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: rop:ROP_69450 putative rRNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
     
 0.417
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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