STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3110PFAM: protein of unknown function UPF0118; KEGG: mgi:Mflv_4850 hypothetical protein. (414 aa)    
Predicted Functional Partners:
Tpau_3109
methylated-DNA/protein- cysteinemethyltransferase; KEGG: nfa:nfa47910 putative methylated-DNA:protein- cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding.
       0.802
Tpau_3111
PFAM: protein of unknown function DUF195; KEGG: rha:RHA1_ro05872 RmuC family DNA recombination protein.
       0.765
Tpau_0352
PFAM: conserved hypothetical protein; KEGG: mab:MAB_4524 hypothetical protein.
  
  
 0.617
Tpau_0365
KEGG: nfa:nfa54850 hypothetical protein.
 
   
 0.537
Tpau_3112
KEGG: mkm:Mkms_4179 hypothetical protein.
       0.499
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.