Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3118KEGG: mbt:JTY_1133 hypothetical protein. (219 aa)    
Predicted Functional Partners:
Tpau_3119
TIGRFAM: fructose-1,6-bisphosphatase, class II; KEGG: rer:RER_42390 fructose 1,6-bisphosphatase class II; PFAM: GlpX family protein.
     
 0.713
Tpau_2076
KEGG: rop:ROP_69960 hypothetical membrane protein.
  
     0.706
Tpau_0334
KEGG: mgi:Mflv_5453 hypothetical protein.
  
     0.687
Tpau_3440
KEGG: mav:MAV_2901 hypothetical protein.
  
     0.674
Tpau_2927
KEGG: rha:RHA1_ro06456 hypothetical protein.
  
     0.655
Tpau_0416
KEGG: rer:RER_11110 hypothetical protein.
  
     0.643
Tpau_1333
Hypothetical protein; KEGG: rha:RHA1_ro05481 protease.
  
     0.625
Tpau_0516
KEGG: nfa:nfa53740 hypothetical protein.
  
     0.611
Tpau_3546
KEGG: rop:ROP_49410 hypothetical protein.
  
     0.608
Tpau_0332
Secretion protein snm4; KEGG: msm:MSMEG_0068 transmembrane protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.604
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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