Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3127PFAM: transcriptional regulator PadR family protein; KEGG: mjl:Mjls_5597 PadR family transcriptional regulator. (128 aa)    
Predicted Functional Partners:
Tpau_3126
KEGG: rha:RHA1_ro00245 hypothetical protein.
 
     0.927
Tpau_3128
PhoH family protein; KEGG: rop:ROP_59220 putative ATP-binding protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc.
       0.639
Tpau_3125
PFAM: Protein of unknown function DUF2266, transmembrane; KEGG: ret:RHE_CH00472 hypothetical protein.
       0.637
Tpau_3124
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.472
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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