Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_3156KEGG: sen:SACE_0031 hypothetical protein. (68 aa)    
Predicted Functional Partners:
Tpau_3155
PFAM: Clp domain protein; KEGG: nfa:nfa51490 putative Clp protease subunit.
     
 0.855
Tpau_2681
PFAM: glycosyl transferase group 1; KEGG: nfa:nfa17180 putative glycosyltransferase.
  
     0.468
Tpau_3154
PFAM: protein of unknown function DUF1112; KEGG: rer:RER_42700 hypothetical protein.
       0.462
Tpau_3157
Hypothetical protein.
       0.461
Tpau_4099
PFAM: Protein of unknown function DUF2587; KEGG: rer:RER_02610 hypothetical protein.
  
     0.441
Tpau_2928
KEGG: rop:ROP_04490 putative Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.430
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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