Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_3222KEGG: mth:MTH1892 hypothetical protein. (175 aa)    
Predicted Functional Partners:
Tpau_3223
KEGG: met:M446_0049 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
 
     0.907
Tpau_1548
KEGG: mab:MAB_1173c hypothetical protein.
  
     0.563
Tpau_1549
KEGG: mab:MAB_1172c hypothetical protein.
  
     0.517
Tpau_0122
KEGG: stp:Strop_4198 hypothetical protein.
  
     0.500
Tpau_3777
PFAM: Pyoverdine biosynthesis protein; KEGG: rsa:RSal33209_2067 pyoverdine biosynthesis protein.
  
     0.456
Tpau_4027
KEGG: mab:MAB_1173c hypothetical protein.
  
     0.415
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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