Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_3259KEGG: msm:MSMEG_5268 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Tpau_3260
KEGG: nfa:nfa1500 putative 1-acylglycerol-3- phosphate O-acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
  
  
 0.562
Tpau_1570
PFAM: OsmC family protein; KEGG: rha:RHA1_ro06525 hypothetical protein.
  
     0.548
Tpau_1212
KEGG: nfa:nfa46910 hypothetical protein.
  
     0.540
Tpau_3258
KEGG: mva:Mvan_4673 hypothetical protein.
 
    
0.533
Tpau_1500
KEGG: nfa:nfa27990 hypothetical protein.
  
     0.504
Tpau_1406
KEGG: mab:MAB_0672c hypothetical protein.
  
     0.470
Tpau_1927
PFAM: RDD domain containing protein; KEGG: bcv:Bcav_3212 FHA domain containing protein.
 
    0.449
Tpau_3374
KEGG: nfa:nfa8180 hypothetical protein.
  
     0.449
Tpau_0297
PFAM: condensation domain protein; KEGG: nfa:nfa30230 hypothetical protein.
  
     0.440
Tpau_0410
PFAM: condensation domain protein; KEGG: nfa:nfa30230 hypothetical protein.
  
     0.439
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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