Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3322PFAM: regulatory protein TetR; KEGG: nfa:nfa50360 putative transcriptional regulator. (206 aa)    
Predicted Functional Partners:
Tpau_3318
PFAM: MaoC domain protein dehydratase; KEGG: mav:MAV_1673 MoaC domain-containing protein.
 
   
 0.702
Tpau_3317
KEGG: nfa:nfa50410 putative citrate lyase beta subunit; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.636
Tpau_3321
KEGG: rha:RHA1_ro06095 fatty acid CoA carboxylase B subunit; PFAM: carboxyl transferase.
 
   
 0.625
Tpau_3319
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: mmi:MMAR_3847 acyl-CoA dehydrogenase FadE19.
 
   
 0.603
Tpau_3320
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: mgi:Mflv_2553 carbamoyl-phosphate synthase L chain, ATP-binding.
   
 
 0.580
Tpau_3316
PFAM: AMP-dependent synthetase and ligase; KEGG: rer:RER_18180 fatty-acid--CoA ligase.
     
 0.514
Tpau_3315
KEGG: mab:MAB_4376c putative acetoacetyl-CoA synthetase; TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase.
       0.501
Tpau_3314
KEGG: mkm:Mkms_2781 chorismate mutase; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase.
  
    0.429
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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