Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3330KEGG: rop:ROP_39000 hypothetical membrane protein. (591 aa)    
Predicted Functional Partners:
Tpau_0416
KEGG: rer:RER_11110 hypothetical protein.
 
     0.742
Tpau_2076
KEGG: rop:ROP_69960 hypothetical membrane protein.
  
     0.741
Tpau_0414
KEGG: rha:RHA1_ro05188 hypothetical protein.
 
     0.692
Tpau_3331
Chorismate mutase; KEGG: nfa:nfa49960 hypothetical protein; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase.
       0.684
Tpau_2927
KEGG: rha:RHA1_ro06456 hypothetical protein.
  
   
 0.678
Tpau_1896
PFAM: Protein of unknown function DUF2029; KEGG: rer:RER_28550 arabinosyltransferase AftC.
  
     0.660
Tpau_0401
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro05186 methyltransferase.
  
     0.648
Tpau_0418
PFAM: coagulation factor 5/8 type domain protein; KEGG: rha:RHA1_ro05192 hypothetical protein.
 
     0.648
Tpau_0171
KEGG: mab:MAB_0178 cutinase precursor.
  
   
 0.618
Tpau_0170
KEGG: nfa:nfa1860 hypothetical protein.
  
   
 0.598
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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