Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3351SMART: Helix-turn-helix, AraC domain; KEGG: nfa:pnf1370 putative DNA-binding protein. (226 aa)    
Predicted Functional Partners:
Tpau_3352
PFAM: fatty acid hydroxylase; KEGG: nfa:nfa53570 hypothetical protein.
 
     0.827
Tpau_3350
PFAM: inositol monophosphatase; KEGG: cgt:cgR_0960 hypothetical protein.
       0.778
Tpau_2731
SMART: Helix-turn-helix, AraC domain; KEGG: nfa:nfa15840 putative transcriptional regulator.
  
     0.574
Tpau_3349
KEGG: msm:MSMEG_5545 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA- binding; Belongs to the FPG family.
       0.572
Tpau_3348
PFAM: iron permease FTR1; Peptidase M75, Imelysin; KEGG: mab:MAB_1159 putative iron permease FTR1.
  
  
 0.471
Tpau_3347
Dyp-type peroxidase family; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
    0.439
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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