Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3371KEGG: nfa:nfa8210 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Tpau_3372
PFAM: PPE protein; KEGG: nfa:nfa8200 hypothetical protein.
  
  
 0.793
Tpau_3373
Hypothetical protein.
       0.778
Tpau_0394
KEGG: nfa:nfa8260 hypothetical protein; PFAM: AAA ATPase central domain protein; Tetratricopeptide TPR_4; SMART: AAA ATPase.
  
  
 0.657
Tpau_3370
KEGG: cgt:cgR_0697 hypothetical protein; Belongs to the WXG100 family.
     
 0.635
Tpau_3374
KEGG: nfa:nfa8180 hypothetical protein.
       0.629
Tpau_3369
KEGG: cjk:jk1747 hypothetical protein; Belongs to the WXG100 family.
     
 0.560
Tpau_3377
KEGG: nfa:nfa8150 hypothetical protein.
       0.497
Tpau_0327
PFAM: PPE protein; KEGG: mkm:Mkms_0078 PPE protein.
  
  
 0.482
Tpau_3375
KEGG: nfa:nfa8170 hypothetical protein.
       0.472
Tpau_3376
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
    0.466
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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