STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3405PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rer:RER_04900 hypothetical protein. (570 aa)    
Predicted Functional Partners:
Tpau_3408
KEGG: sgr:SGR_235 putative urease accessory protein.
 
     0.693
Tpau_3630
Integral membrane sensor signal transduction histidine kinase; KEGG: rer:RER_09880 two-component histidine kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.
 
      0.603
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
     0.600
Tpau_3406
KEGG: sgr:SGR_233 putative urease accessory protein.
 
   
 0.582
ureC
TIGRFAM: urease, alpha subunit; KEGG: sgr:SGR_236 urease subunit alpha; PFAM: amidohydrolase; Urease alpha-subunit domain protein.
     
 0.538
Tpau_3411
TIGRFAM: urease, gamma subunit; KEGG: rer:RER_48000 urease gamma subunit; PFAM: Urease gamma subunit region; Belongs to the urease gamma subunit family.
       0.524
Tpau_1721
Formamidase; KEGG: msm:MSMEG_4367 formamidase; PFAM: Acetamidase/Formamidase.
 
     0.522
Tpau_3410
KEGG: rer:RER_47990 urease beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit.
     
 0.511
Tpau_2966
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mva:Mvan_5279 amidohydrolase.
 
  
 0.486
Tpau_0094
KEGG: mgi:Mflv_3888 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.
 
      0.471
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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