Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3438KEGG: rsa:RSal33209_0057 hypothetical protein. (188 aa)    
Predicted Functional Partners:
Tpau_3539
PFAM: Forkhead-associated protein; KEGG: nfa:nfa8620 hypothetical protein.
 
     0.559
Tpau_3439
KEGG: rop:ROP_61840 hypothetical protein.
       0.550
Tpau_2367
PFAM: Mammalian cell entry related domain protein; KEGG: nfa:nfa11150 putative Mce family protein.
 
     0.542
Tpau_0400
PFAM: MgtE intracellular region; KEGG: similar to gag protein.
 
     0.516
Tpau_3378
KEGG: nfa:nfa8520 hypothetical protein.
  
  
 0.503
Tpau_2325
PFAM: cytochrome b5; fatty acid desaturase; KEGG: nfa:nfa49300 hypothetical protein.
  
     0.484
Tpau_0881
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
 
     0.480
Tpau_3922
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.471
Tpau_0078
Hypothetical protein; KEGG: xop:PXO_03299 endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.447
Tpau_0075
KEGG: swi:Swit_0389 hypothetical protein.
  
     0.437
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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